FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005480604

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480604
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40249835
Sequences flagged as poor quality0
Sequence length25-101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA881730.2190642520646358No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA594450.14769004643124622No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC572490.14223412344423275No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)