FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005480607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50654711
Sequences flagged as poor quality0
Sequence length25-101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA4251540.83931778823099No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC1029360.20321110903189243No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA937220.1850212905172828No Hit
CTCAGGACAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC800330.15799715055130806No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG757470.14953594345844753No Hit
CTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGAC576500.11380975009412253No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG575040.11352152418755287No Hit
CCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGC555610.10968575065012215No Hit
CCACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAA515130.10169439126797111No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)