FastQCFastQC Report
Wed 15 May 2024
EGAF00005480624

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480624
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57841349
Total Bases5.8 Gbp
Sequences flagged as poor quality0
Sequence length25-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA1287570.2226037293839741No Hit
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCG1070850.18513572358072078No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC930480.16086761738561803No Hit
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCG830000.14349596168650908No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)