FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005480637

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45573097
Sequences flagged as poor quality0
Sequence length25-101
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA1847550.4054036529490194No Hit
GCCAGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC560030.12288609659334761No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC481470.10564785623412866No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)