FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005480639

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480639
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44482458
Sequences flagged as poor quality0
Sequence length25-101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1182270.2657834241084429No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG555760.12493913892977766No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC491990.11060315057229975No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)