FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005480645

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480645
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46353656
Sequences flagged as poor quality0
Sequence length25-101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA2253130.48607384927739034No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1200220.2589267176681813No Hit
CTCAGACCGCGTTCTCTCCCTCTTACTCCCCAATACGGAGAGAAGAACGA651910.1406383134050958No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC623590.1345287629523764No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG494630.10670787219027557No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)