FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005480677

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480677
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35335189
Sequences flagged as poor quality0
Sequence length25-101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1138060.3220755377875579No Hit
TGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTTT675230.19109279421145872No Hit
GGGGATTCGGCGCTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAA378990.10725568780741487No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)