FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005480681

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480681
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44490705
Sequences flagged as poor quality0
Sequence length25-101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTTCTGTGCGCAGTTTGTAGTAGTTCTTACACTGGTAGCGAACCGAG548610.1233089023875886No Hit
CGCAGTTTGTAGTAGTTCTTACACTGGTAGCGAACCGAGTGCTCCACATA469970.10563330025900916No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA465710.10467579688836129No Hit
CAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACGAA446360.10032657383154525No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)