FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005480689

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480689
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38804732
Sequences flagged as poor quality0
Sequence length25-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1828650.4712440740474641No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA1517280.3910038600446976No Hit
GTCGTATCCGAGGATGCCTGTCATGCTGCCGGTGCCGTAGGTGATGGAGA889490.22922204436304316No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG647410.1668379000787842No Hit
CTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTT640580.16507780545939604No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCA588310.15160779876021305No Hit
CTGACGGCAGTTGCAGCGAAGCAACGCCAAAAAGCCGGCTTCACGCTCAG587350.151360406251485No Hit
CGCTGGTGGACTGGTAGGTGGAAGAATCCTCAGGGTTGAAGCGGTTGTGG577120.14872412983035163No Hit
GGAGACTGTCTCGCTGGTGGACTGGTAGGTGGAAGAATCCTCAGGGTTGA544530.14032566956009385No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTAT514730.132646193768327No Hit
GCCTGTCATGCTGCCGGTGCCGTAGGTGATGGAGACTGTCTCGCTGGTGG512530.13207925260249187No Hit
GCTGACGGCAGTTGCAGCGAAGCAACGCCAAAAAGCCGGCTTCACGCTCA486270.12531203668665974No Hit
CTCCGTTCATGGTGATGCTGTCCACGGTGATCTGCCAGTAACCCTCGACG474440.12226343941764628No Hit
CGGTGATCTGCCAGTAACCCTCGACGGTAACAGGCACCCAGTTCAGACTT474370.12224540038055154No Hit
CTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGGCG460660.11871232611527893No Hit
CGGTGCCGTAGGTGATGGAGACTGTCTCGCTGGTGGACTGGTAGGTGGAA441490.1137722069566155No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG432500.11145547919258919No Hit
GCTGGGTTGAGGTTGTGCTTCTTCAGGAAGTCCTTCAGCAGGCCACGCTC416650.10737092579327698No Hit
GTCGAAGACGGTAAAGTACTGGCGGATGAAGACATCACCCAGGATCCAAA392320.10110107190020022No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)