FastQCFastQC Report
Thu 12 May 2022
EGAF00005480697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005480697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37663286
Sequences flagged as poor quality0
Sequence length25-101
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC2048170.5438107551210482No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG548860.14572812366929427No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC531340.1410763787312663No Hit
GCCAGACTCAGAAAAAAGGTGAAATTTAAAACGAACGAGAAGGGGAAGGG489560.12998334770895986No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA456570.12122415447234211No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)