FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005481333

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005481333
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57357013
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG1304750.22747872173887437No Hit
CCCAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACGA750710.13088373343291082No Hit
CTCCTTCTGTGCGCAGTTTGTAGTAGTTCTTACACTGGTAGCGAACCGAGT674750.11764036596536155No Hit
CTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTTT585690.10211305808410909No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)