FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005481426

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005481426
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47935727
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGACGA79150.017.9087245
CTCCGGT82250.016.007451
CCCCCCT41050.015.62551
TAAACCG89450.015.57029911
TCGGCGC43850.015.44442745
GTCCGTT34800.015.2628261
ATGCGCG20100.014.77586145
AGACCGC121800.014.7410434
ACCGCGT122050.014.6002726
AACCGAT99100.014.48547613
CGTTACG15800.014.38258521
GACCGCG127100.014.1440525
CGCAATC33600.013.997132
CAGACCG129550.013.929993
ATCGAGC65800.013.67757242
CTCGACG108700.013.33003344
TTCGGCG52450.013.29814544
TTAACGC25550.013.2095197
CCCGTAT28150.013.1919121
CCGCGTT135150.013.1688287
Produced by FastQC (version 0.11.5)