FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005481492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005481492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55440435
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGGGAGAAGAACGAT2267350.40897045631045287No Hit
GTGCAAATTAAATTCAGAAGGGACGGGGGAAACAGAGTCGTGGAGGCTTTG1137700.20521123255977336No Hit
GGGGAAACAGAGTCGTGGAGGCTTTGAATCTCTCAGAAAAAAGGAAAGACA748260.13496647347734556No Hit
CTCGTACTGAGACTCAAGGCCGTCTCCACAACTCCAACCAGTGCAAATGAC714360.12885180284029157No Hit
GGGGGAAACAGAGTCGTGGAGGCTTTGAATCTCTCAGAAAAAAGGAAAGAC649460.11714554548498764No Hit
CTCCAACCAGTGCAAATGACTTAGTGCAAATTAAATTCAGAAGGGACGGGG616130.1111336878940434No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGGGAGAAGAACGA614190.11078376278974No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG613130.1105925665987289No Hit
GGGAAACAGAGTCGTGGAGGCTTTGAATCTCTCAGAAAAAAGGAAAGACAG556820.10043571988567551No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)