FastQCFastQC Report
Wed 11 May 2022
EGAF00005481493

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005481493
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55440435
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG786520.14186757373025663No Hit
CCACCACCTCCCTCTTCTTCTTTTTCATCCTTCTGTCTCTTTGTTTCTGAG767840.13849819179809827No Hit
CCTCCCTCTTCTTCTTTTTCATCCTTCTGTCTCTTTGTTTCTGAGCTTTCC686940.12390595420111693No Hit
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCGG580680.10473943792107693No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)