FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005481544

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005481544
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49345630
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG1236260.25053079674937784No Hit
CTCGTCTTGCTGTGCCATGCCCGCCTCTTCACGGGCAGGTCAATTTCACTG813990.1649568563619514No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT689810.13979150737360127No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACG655450.1328283781157521No Hit
CTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTTT640650.12982912569968202No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)