EGAF00005481554 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005481554
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	48606650
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA	116360	0.23939111212148956	No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG	103641	0.21322391072003521	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	76161	0.15668843666453047	No Hit
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGT	63571	0.13078663104739782	No Hit
GCCGTCCCCACCACCTCCCTCTTCTTCTTTTTCATCCTTCTGTCTCTTTGT	59016	0.12141548532968226	No Hit
CTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAAC	52669	0.1083576012747227	No Hit
ATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA	50786	0.10448364575629054	No Hit
CCACCACCTCCCTCTTCTTCTTTTTCATCCTTCTGTCTCTTTGTTTCTGAG	49987	0.10283983775882517	No Hit
CAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAG	48770	0.10033606512689108	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ATATAGC	3560	17.551924	6
GTTGTCG	3960	14.258635	26
TATAGCT	4900	13.628889	7
CGGCTTA	8530	13.504392	30
AATATAG	5845	13.125351	5
GGGAGGT	23460	13.051958	3
TCAGACG	11940	13.020248	2
GGAGGTC	23225	12.941848	4
GTCACTC	23570	12.74555	8
GCTAAGT	4600	12.712269	14
TAGCACG	3390	12.477058	29
TTGTCGT	4735	12.306493	27
TGTCGTT	4740	12.151114	28
AACGCTA	3155	12.122506	23
AGGGATC	24690	11.818557	2
CAGGGAT	26425	11.704153	1
ATAGGGG	21605	11.589951	38
CGCTTAA	855	11.574749	16
ATATCGT	2400	11.437152	33
GGCATAG	21600	11.363177	35