FastQCFastQC Report
Wed 11 May 2022
EGAF00005481556

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005481556
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54004465
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGT1008610.1867641869982417No Hit
GGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGC690310.1278246159831414No Hit
GATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA588220.10892062350770441No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)