FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005481615

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005481615
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44117939
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCGACG36650.027.6253346
CGACGAG42800.023.18198
CGGTATA61350.021.67340320
GTTCGAC51500.019.878025
AACGCTA98600.018.11766623
TCACGCT105700.018.007348
ACGCTAC103700.017.29179824
CAGTTCG64000.017.2611793
GTCCGTT38600.017.2600961
CGCTACC108350.016.54969425
ATGACGG77200.016.49503716
GTATAGA87100.016.45431922
TTCACGC116650.016.2982487
AGTTCGA65850.016.1612264
CTCCGGT50700.015.9376871
GACCGCG34850.015.42993455
CCCGTAT30950.015.4175021
AAAACGC117650.015.37511321
CACGCTC124650.015.2336649
TAAACCG44600.015.18398811
Produced by FastQC (version 0.11.5)