FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005481746

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005481746
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55990687
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCAAATTAAATTCAGAAGGGACGGGGGAAACAGAGTCGTGGAGGCTTTG1061020.1894993715651319No Hit
CTCGCACCGAGACTCAAGGCCGTCTCCACAACTCCAACCAGTGCAAATGAC994710.17765633059655084No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT793920.14179500958793378No Hit
GGGGGAAACAGAGTCGTGGAGGCTTTGAATCTCTCAGAAAAAAGGAAAGAC700140.12504579556239415No Hit
GGGGAAACAGAGTCGTGGAGGCTTTGAATCTCTCAGAAAAAAGGAAAGACA688130.12290079598416073No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG563930.10071853556645946No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)