FastQCFastQC Report
Wed 11 May 2022
EGAF00005481788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005481788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57480445
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTGACTTGCCCGGCAAGTGATGGTGACTCTGTCTCCTACAGATGCAGAC1135990.19763068988070637No Hit
CTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTTT965990.16805541432394966No Hit
CTGGGCTTGTGATTCACGTTGCAGATGTAGGTCTGGGTGCCCAAGCTGCTG718060.1249224845075573No Hit
GTTAAAAGTAAGAGACAGCTGAACCCTCGTGGAGCCATTCATACAGGTCCC686260.11939016825635222No Hit
CTCGTCTTGCTGTGTCATGCCCGCCTCTTCACGGGCAGGTCAATTTCACTG628920.10941460178326733No Hit
GTCGGAGTCCAGCACGGGAGGCGTGGTCTTGTAGTTGTTCTCCGGCTGCCC604920.10523926876348992No Hit
GTCCACGGTGAGCTTGCTATAGAGGAAGAAGGAGCCGTCGGAGTCCAGCAC577850.1005298410615993No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)