FastQCFastQC Report
Thu 12 May 2022
EGAF00005481836

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005481836
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65792343
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT1118740.17004106389705562No Hit
CCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGAAACCCACACATA1075490.16346735060035786No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG902960.1372439342979471No Hit
CCCAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACGA809700.12306903251644344No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG758190.11523985397510468No Hit
CACCTGAAAAAAATTCCAAAAGAGAACCACACACTACCATATCCAAACAAC672480.10221250214481646No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)