FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005481857

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005481857
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58808007
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA4991700.8488129856194583No Hit
GCCAGCTTCACGCTCAGGAGAAAAACGCTACCTCTCTTCCTCGTGGTTTT1708250.2904791519290902No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG1038450.17658309692419946No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC768600.1306964883200344No Hit
CTCAGGAGAAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACA729260.12400692307086686No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)