FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005481858

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005481858
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58808007
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC1157460.19682013709459667No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA1007040.1712419875069053No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA979780.16660656430679585No Hit
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTTCTCCTGAGCGTGAAGCT708280.12043938166447299No Hit
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCG685140.11650454333539989No Hit
CAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTA607350.10327675277279844No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)