FastQCFastQC Report
Wed 11 May 2022
EGAF00005481860

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005481860
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55034376
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT1234680.22434705174089736No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGGGAGAAGAACGAT1212570.22032956274456533No Hit
GTGCAAATTAAATTCAGAAGGGACGGGGGAAACAGAGTCGTGGAGGCTTTG860660.15638589233754552No Hit
CTCGTACTGAGACTCAAGGCCGTCTCCACAACTCCAACCAGTGCAAATGAC612860.11135948920362067No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)