FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005481998

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005481998
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51629884
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGCCTCAGATTTCTCACCAACACATCTCCATACTGGGCAATGATAGGGA1119720.21687439778094408No Hit
GGACACTGCTGAAGATACTGAGCAAAGGCAATCAACACCAAGGCTTTGAAA991270.19199539553488054No Hit
GTCCAGTACTTTGGGTCACGGTGAAGAGCATAGCTTGGAATCATCACCACC763760.1479298307158699No Hit
CTCAGATTTCTCACCAACACATCTCCATACTGGGCAATGATAGGGACCATC674350.13061234071337444No Hit
CTCCGGTTTGTGAAGACAGAATAACATTCTTTCACTAGCACTGTTTTGATC634200.12283583670263523No Hit
GGCGTTTTCTCATGCAACACACATAACTGGTTCAGGACCACGGATAGATAG585470.11339750443754629No Hit
CTAGGTTTCTTGAGACCTCTACAAGAGTTGGAGTTGACACTTGGGGTACTT531810.10300429882817477No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)