FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005482017

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482017
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54342782
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCCCTCTTCTTCTTTTTCATCCTTCTGTCTCTTTGTTTCTGAGCTTTCC736690.13556354181499208No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG731720.13464897693312794No Hit
CCACCACCTCCCTCTTCTTCTTTTTCATCCTTCTGTCTCTTTGTTTCTGAG649220.11946756792834053No Hit
GCCGTCCCCACCACCTCCCTCTTCTTCTTTTTCATCCTTCTGTCTCTTTGT599190.11026119347367971No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)