FastQCFastQC Report
Wed 11 May 2022
EGAF00005482029

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482029
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53218795
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT2483830.46672045092340025No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGGGAGAAGAACGAT2174020.408506055050664No Hit
GTGCAAATAAAATTCAGAAGGGACGGGGGAAACAGAGTCGTGGAGGCTTTG662250.12443911967567098No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA634240.11917594150713108No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGGGAGAAGAACGA564740.10611664544452765No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)