Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005482045 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 47619227 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT | 62676 | 0.1316191041908345 | No Hit |
CCCAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACGA | 51392 | 0.10792279345483706 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GACCGCG | 15635 | 0.0 | 20.316795 | 5 |
ACCGCGT | 15745 | 0.0 | 20.117586 | 6 |
AGACCGC | 15800 | 0.0 | 20.06211 | 4 |
CAGACCG | 16700 | 0.0 | 19.156172 | 3 |
TCGGCGC | 5890 | 0.0 | 18.448591 | 45 |
CCGCGTT | 17220 | 0.0 | 18.381325 | 7 |
CTCGACG | 14170 | 0.0 | 17.94014 | 44 |
CGCGTTC | 17755 | 0.0 | 17.865501 | 8 |
TCGACGA | 14315 | 0.0 | 17.774714 | 45 |
ATCGAGC | 10120 | 0.0 | 16.850233 | 42 |
TTCGACG | 2080 | 0.0 | 16.764254 | 6 |
GACGAAA | 6315 | 0.0 | 16.67262 | 45 |
TAAACCG | 15210 | 0.0 | 16.639755 | 11 |
AACCGAT | 15570 | 0.0 | 16.240572 | 13 |
CCCGTAT | 2975 | 0.0 | 16.130873 | 1 |
CCCAAAT | 21565 | 0.0 | 15.99525 | 1 |
TCAGACC | 20335 | 0.0 | 15.931171 | 2 |
TTCGGCG | 6980 | 0.0 | 15.728295 | 44 |
GAACGAT | 19650 | 0.0 | 15.467644 | 45 |
AAACCGA | 16780 | 0.0 | 15.082875 | 12 |