FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005482073

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482073
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47442224
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG727300.1533022566564333No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA678160.14294439484961752No Hit
CCACCACCTCCCTCTTCTTCTTTTTCATCCTTCTGTCTCTTTGTTTCTGAG580580.12237621912497187No Hit
CCTCCCTCTTCTTCTTTTTCATCCTTCTGTCTCTTTGTTTCTGAGCTTTCC568280.11978359193278966No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)