Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005482100 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43786143 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATTC | 194681 | 0.44461783263257515 | No Hit |
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACT | 115407 | 0.2635696868755944 | No Hit |
GCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATTC | 85078 | 0.19430348089805488 | No Hit |
CGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATT | 75742 | 0.1729816668255069 | No Hit |
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA | 73210 | 0.16719901545107546 | No Hit |
ATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAA | 69697 | 0.15917592924318544 | No Hit |
CGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTG | 63838 | 0.14579498358647391 | No Hit |
GACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAA | 63215 | 0.1443721590184365 | No Hit |
GCCGTCCCCACCACCTCCCTCTTCTTCTTTTTCATCCTTCTGTCTCTTTGT | 63090 | 0.1440866805738062 | No Hit |
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAA | 58785 | 0.13425480294073858 | No Hit |
GTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTA | 52457 | 0.11980274215977414 | No Hit |
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACT | 46566 | 0.10634871402123726 | No Hit |
CTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGC | 45875 | 0.10477058917932094 | No Hit |
ATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCA | 44674 | 0.10202771228331302 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCAGACG | 30115 | 0.0 | 17.32457 | 2 |
GGTAGGC | 8825 | 0.0 | 16.693388 | 31 |
GAACGCT | 9835 | 0.0 | 16.62486 | 21 |
AACGCTG | 10035 | 0.0 | 16.240568 | 22 |
GCCTAAC | 8960 | 0.0 | 16.14625 | 36 |
ATCAGAC | 33805 | 0.0 | 15.399531 | 1 |
TGCCCGT | 21000 | 0.0 | 15.093911 | 44 |
GTAGGCC | 9570 | 0.0 | 14.884681 | 32 |
GGCCTAA | 9835 | 0.0 | 14.794078 | 35 |
AGGATTC | 99335 | 0.0 | 14.7021675 | 45 |
CGGTAGG | 10255 | 0.0 | 14.036814 | 30 |
TAGGCCT | 10535 | 0.0 | 13.668076 | 33 |
ACTAACC | 102745 | 0.0 | 13.500304 | 38 |
GCCCGTG | 23605 | 0.0 | 13.492302 | 45 |
CTAACCA | 103315 | 0.0 | 13.449808 | 39 |
CCAGGAT | 104195 | 0.0 | 13.342875 | 43 |
AACTAAC | 109450 | 0.0 | 13.312804 | 37 |
CTAACAC | 11160 | 0.0 | 13.251255 | 38 |
GGCGGTA | 10835 | 0.0 | 13.2445965 | 28 |
CAGACGT | 40805 | 0.0 | 13.160075 | 1 |