FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005482544

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482544
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52762087
Sequences flagged as poor quality0
Sequence length0-98
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA2511800.4760615325925224No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC1778470.3370734747471229No Hit
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG1704500.3230539383326516No Hit
CCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGT992740.18815404326216284No Hit
CGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCTAGCTGCGAG642210.12171808139431634No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)