FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005482590

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482590
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64979874
Sequences flagged as poor quality0
Sequence length0-98
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG2799250.43078723113559747No Hit
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA1789410.2753791120001248No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC1611720.24803372194904533No Hit
CCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGT1064980.16389382349371745No Hit
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG824830.12693622643835845No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)