FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005482608

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482608
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56234225
Sequences flagged as poor quality0
Sequence length0-98
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG1771200.31496833111863815No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC1745160.310337699150295No Hit
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA1466580.2607984728161542No Hit
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG773920.1376243737688214No Hit
CCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGT663150.11792640513850773No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)