FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005482666

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482666
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65723646
Sequences flagged as poor quality0
Sequence length0-98
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG5381320.818779895442806No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC2794780.425232039013782No Hit
CCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGT2020900.30748446305002614No Hit
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA1852130.2818057294021698No Hit
CGGGGGGCCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCG1607770.2446258078865558No Hit
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG1350110.20542226157082033No Hit
CGGCGGGGGACCGTCCCCCGACCGGCGACCGGCCGCCGCCGGGCGCATTT860340.1309026586869511No Hit
CGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCTAGCTGCGAG732490.11144999472488182No Hit
GAAACCCCCCCCGAGTGTTACAGCCCCCCCGGCAGCAGCACTCGCCGAAT680680.10356698713884498No Hit
GAGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCGCGCCGGCCGGGC666100.10134860747074195No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)