FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005482687

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482687
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57101448
Sequences flagged as poor quality0
Sequence length1-101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6009341.0523971301043014No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG1797830.3148484080473756No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG670050.11734378434676473No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGA575650.10081180428209105No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)