FastQCFastQC Report
Thu 12 May 2022
EGAF00005482711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50692830
Sequences flagged as poor quality0
Sequence length1-101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5604411.105562660439356No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG1578920.3114681109734848No Hit
CGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAA824000.16254764233916313No Hit
TCGGTCTTCAAAGTTCTCGTTTGAATATTTGCTACTACCACCAAGATCTG707290.13952466256076057No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCA682200.13457524466477805No Hit
CCCTGAGCTCGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGC633450.12495850004823168No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)