FastQCFastQC Report
Thu 12 May 2022
EGAF00005482724

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482724
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48876776
Sequences flagged as poor quality0
Sequence length0-98
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG3524280.7210541055326563No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC1506540.3082322778409116No Hit
CCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGT1298580.265684463312392No Hit
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG963070.1970404103576717No Hit
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA941790.19268660437014093No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)