FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005482754

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482754
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70026707
Sequences flagged as poor quality0
Sequence length0-98
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA3056560.43648489711218325No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC2137660.3052635332402536No Hit
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG1634640.23343093942715312No Hit
TTAATTGGAGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGTATGCCT725940.10366616268276045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)