FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005482768

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482768
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61535484
Sequences flagged as poor quality0
Sequence length0-98
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG5806880.9436636591661487No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC2479840.4029934988404414No Hit
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA2098150.3409658726337474No Hit
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG2088760.33943992380071314No Hit
CCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGT2023420.3288216600360208No Hit
CGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCTAGCTGCGAG1228850.19969778737744226No Hit
GAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAGGCGGA925670.15042865349039913No Hit
GACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCT637230.10355488550313507No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG619390.10065574522823287No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)