FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005482786

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482786
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42461657
Sequences flagged as poor quality0
Sequence length25-101
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGGGAGAAGAACGA2374960.5593187284236223No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1191300.28055899938148904No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGGGAGAAGAACGATCATCA631760.14878364261667884No Hit
CTGACGGCAGTTGCAGCGAAGCAACGCCAAAAAGCCGGCTTCACGCTCAG590300.1390195394400176No Hit
AGAAGAACGATCATCAATGGCTGACGGCAGTTGCAGCGAAGCAACGCCAA536270.12629511844062044No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG516700.12168625449543809No Hit
CTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGGCG443060.10434354928730172No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)