FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005482800

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482800
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41981079
Sequences flagged as poor quality0
Sequence length25-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGGGAGAAGAACGA3643530.8678981309651427No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC2050350.488398594995617No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGGGAGAAGAACGATCATCA1440780.3431974676020118No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG936360.22304333816670122No Hit
AGAAGAACGATCATCAATGGCTGACGGCAGTTGCAGCGAAGCAACGCCAA900110.21440849578925783No Hit
CTCCCTCTCACTCCCCAATACGGGGAGAAGAACGATCATCAATGGCTGAC861430.20519482121934027No Hit
CTGACGGCAGTTGCAGCGAAGCAACGCCAAAAAGCCGGCTTCACGCTCAG709240.1689427753869785No Hit
CGCGTTCTCTCCCTCTCACTCCCCAATACGGGGAGAAGAACGATCATCAA645670.15380023938879703No Hit
GGGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAGCGAAGCAACGC621480.14803811974437342No Hit
CGATCATCAATGGCTGACGGCAGTTGCAGCGAAGCAACGCCAAAAAGCCG559690.13331958428224297No Hit
GAACGATCATCAATGGCTGACGGCAGTTGCAGCGAAGCAACGCCAAAAAG554070.1319808859605538No Hit
AGAACGATCATCAATGGCTGACGGCAGTTGCAGCGAAGCAACGCCAAAAA450960.10741982120087956No Hit
GGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAGCGAAGCAACGCC423600.10090259947820779No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)