FastQCFastQC Report
Thu 12 May 2022
EGAF00005482808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38529041
Sequences flagged as poor quality0
Sequence length25-101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC2073220.5380928116015138No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGGGAGAAGAACGA1566570.4065945996423841No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA1487230.38600234041641474No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG926980.24059254420581092No Hit
CTTTTCTTCCCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTCTTTTC779280.202257824169566No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCA738910.19178001341896883No Hit
CTGACGGCAGTTGCAGCGAAGCAACGCCAAAAAGCCGGCTTCACGCTCAG435400.11300566759499672No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGGGAGAAGAACGATCATCA411150.1067117138991339No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)