FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005482820

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482820
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56775419
Sequences flagged as poor quality0
Sequence length25-101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA4193590.738627750153636No Hit
GCCAGCTTCACGCTCAGGAGAAAAACGCTACCTCTCTTCCTCGTGGTTTT2353000.41443991809201797No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCA1779750.3134719269971394No Hit
CTGACGGCAGTTGCAGCGAAGCAACGCCAAAAAGCCGGCTTCACGCTCAG900090.15853515761812342No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC898250.15821107370427331No Hit
CGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAA756610.13326365764028972No Hit
CTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCA701950.1236362518081989No Hit
CTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGAC669290.11788376233735941No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)