FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005482830

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482830
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52767755
Sequences flagged as poor quality0
Sequence length25-101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA1726450.327178975114632No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1404550.2661758113453946No Hit
CTCAGACCGCGTTCTCTCCTTCTCACTCCCCAATACGGGGAGAAGAACGA1249090.23671463756606664No Hit
GCCAGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC863340.16361128116972193No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG680460.12895375215413277No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)