FastQCFastQC Report
Thu 12 May 2022
EGAF00005482850

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482850
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45947223
Sequences flagged as poor quality0
Sequence length25-101
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA5080431.1057099141769677No Hit
GCCAGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1419030.30883912178979783No Hit
GCCAGCTTCACGCTCAGGAGATAAACGCTACCTCTCTTCCTCGTGGTTTA462120.10057626333587123No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)