FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005482868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44357828
Sequences flagged as poor quality0
Sequence length25-101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA2369800.5342461763456948No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGGGAGAAGAACGA932640.21025375723987208No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC588510.13267331303958346No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG521440.11755309570162002No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAACACGGAGAGAAGAACGA504580.1137521882270701No Hit
GCCAGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC475030.10709045537576818No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)