FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005482872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46556610
Sequences flagged as poor quality0
Sequence length25-101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA1680370.36093048871041084No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1310140.2814079461541551No Hit
CTCAGTTCGACGAGGATGACGGTATAGAGTTTTCACTCATTTTGTTCAGC871660.18722583109036503No Hit
CTCATATCTCATAATCTTCGCTCACAGGACGCTGGACATTCAAAGAAAGA870610.18700029920563374No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG697790.1498798989015738No Hit
CCAAGCGTCCCTGGCTGCTACAGGAGAATAGCAGACAGGTATAGTTAAGA499870.10736821259107998No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)