FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005482873

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482873
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46556610
Sequences flagged as poor quality0
Sequence length25-101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTACAATATAGCTGCTAAGTGCTGTGTTGTCGTTCCCCCTGCTTAAAATA1492680.3206161273340134No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA730040.15680694964689224No Hit
CTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAA588740.1264568017301947No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA504750.10841639887440259No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)