FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005482915

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482915
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16380426
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG694840.4241892121731144No Hit
GGGGGT487320.2975014202927323No Hit
GGGTGG454750.27761793252507594No Hit
TGGGGG402430.2456773712722734No Hit
GTGGGG382140.23329063603107755No Hit
GGTGGG381920.23315632938972403No Hit
GGGGTG371270.22665466697874645No Hit
CGGGGG346090.2112826613911018No Hit
GGGTGT331130.20214980977906188No Hit
GGGGTT328910.20079453367085812No Hit
AGGGGG306080.18685716720676251No Hit
GGGGGA291370.1778769367780789No Hit
GGGGGC289990.17703446784595223No Hit
GTGGGT289460.17671091093723693No Hit
GGTTGG285180.17409803627817738No Hit
GTGTGG280980.17153400039779185No Hit
GGTGGT278480.17000778856422905No Hit
GGGGAG273570.16701030852311166No Hit
TGGGGT272880.16658907405704834No Hit
GGGAGG264770.16163804286897057No Hit
TTGGGG256350.156497761413531No Hit
GGAGGG253220.15458694419791036No Hit
GGGCGG252580.15419623396851828No Hit
GGGTTG249630.15239530400491416No Hit
GAGGGG248550.15173598049281503No Hit
GGGTTT246910.15073478552999783No Hit
GGGGCG238780.14577154464725156No Hit
GCGGGG238720.14573491556324605No Hit
TGGTGG232950.14221241865138304No Hit
TGTGGG228540.13952018097697824No Hit
GTTGGG227850.13909894651091492No Hit
GGTTGT225870.13789018673873318No Hit
GGCGGG223160.13623577311115107No Hit
ATGGGG221190.1350331181863036No Hit
CGGGGT219370.13392203597146984No Hit
GGGGAT214860.13116874982372254No Hit
TGGGTG212480.12971579615817075No Hit
CGGTGG211940.12938613440212116No Hit
GTGGTG211340.12901984356206608No Hit
GGTGTG208140.12706629241510567No Hit
GTGTGT206800.126248242872316No Hit
AGGTGG204680.12495401523745477No Hit
AGGGGT202070.12336065008321517No Hit
GAGGGT201150.12279900412846406No Hit
GGGTAG201130.12278679443379556No Hit
GGTGTT196830.12016171008006751No Hit
TAGGGG193450.11809827168109059No Hit
GGATGG193370.11804943290241658No Hit
GGGGCT192800.11770145660436426No Hit
GGAGGT190250.11614472053413018No Hit
GGGGTA190010.11599820419810815No Hit
GTTTGG189600.11574790545740385No Hit
GGGTCG187320.11435600026519457No Hit
TGGGTT187050.11419116938716978No Hit
TTGTGG186660.11395308034113398No Hit
GGGCGT186270.11371499129509818No Hit
CTGGGG184770.1127992641949605No Hit
TGGTGT183680.11213383583552712No Hit
AGTGGG183040.11174312560613504No Hit
GTGGTT182450.1113829396134142No Hit
GGGAGT179380.10950875148179907No Hit
TGAGGG175390.10707291739543283No Hit
TCGGGG175010.10684093319673128No Hit
TTGGGT173940.10618771453196638No Hit
GGGTGA173580.10596794002793333No Hit
GGTTTT170380.10401438888097295No Hit
GTGAGG170170.10388618708695366No Hit
CGTGGG167680.1023660801007251No Hit
GTTGGT167630.10233555586405385No Hit
TGGTTG167470.10223787830670583No Hit
TGTGGT167320.10214630559669205No Hit
GGGTCT167190.1020669425813468No Hit
GGTTTG166370.1015663450999382No Hit
GGCTGG166220.10147477238992442No Hit
TGTTGG165450.10100469914518706No Hit
GCGGGT164870.10065061799980049No Hit
GGTGGA163980.10010728658705213No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)