FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005482917

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005482917
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32615889
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1116510.3423208853819683No Hit
GGGTGG756360.23189924395438066No Hit
GGGGGT714310.21900675465261732No Hit
GTGGGG674130.20668760554096807No Hit
GGGGTG670100.20545201144141742No Hit
GGTGGG657050.20145089407190464No Hit
TGGGGG652150.19994855881438645No Hit
GGGTGT585960.1796547688766049No Hit
CGGGGG528790.1621265022087854No Hit
AGGGGG520280.1595173444452181No Hit
GGGGTT504860.15478958736951798No Hit
GGGCGG491140.15058304864846703No Hit
TGGTGG490180.1502887135776063No Hit
GGGGAG489310.1500219724196388No Hit
GTGGGT485060.14871892653301585No Hit
GTGTGG481060.14749253040442958No Hit
GGTGGT479760.14709395166263903No Hit
GGGGCG470670.1443069664604267No Hit
GGGAGG466100.14290580888351687No Hit
GGGTTG461850.14160276299689395No Hit
GAGGGG460920.14131762589699762No Hit
GGTTGG456860.14007283382648253No Hit
GCGGGG455020.13950869160733287No Hit
GGGGGA453910.13916836668165017No Hit
GGAGGG450590.13815045789492356No Hit
TGTGGG446140.1367860922018713No Hit
GGGGGC438560.13446207153820028No Hit
TGGGGT434980.13336444700311556No Hit
GTTGGG434200.13312529975804124No Hit
GGCGGG432390.13257035550985594No Hit
GGTGTG429870.1317977259488466No Hit
GTGGTG423750.12992133987210958No Hit
TGGGTG397560.12189151122019087No Hit
GGGTTT378250.11597108390944057No Hit
AGGTGG377120.11562462700311495No Hit
GGTTGT375580.11515246449360923No Hit
CGGTGG375060.11499303299689302No Hit
GGGTAG374080.11469256594538939No Hit
TGGTGT373940.11464964208088885No Hit
GTGTGT370760.11367465715866275No Hit
GGGGCT360680.11058413891462532No Hit
GGGTCG356440.10928415901832386No Hit
CGGGGT355720.10906340771517833No Hit
AGGGGT352360.10803323496716584No Hit
GAGGGT347090.10641745806775342No Hit
GGGGAT346590.10626415855168013No Hit
GGGCGT345430.10590850367439011No Hit
GTGGTT344570.10564482850674406No Hit
GGGGTA342990.10516040203595249No Hit
GGTGTT340980.10454413798133787No Hit
TGTGGT338720.10385122416868661No Hit
ATGGGG337310.10341891953335997No Hit
GTGTTG337220.10339132562046675No Hit
GTTGGT336870.10328401595921545No Hit
AGGGTG335240.10278425953681655No Hit
GTTTGG333280.10218332543380927No Hit
TGTTGG331820.10173569084687528No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)